PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G240400.1.p
Common NameGLYMA_09G240400, LOC100792612
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 393aa    MW: 44604.5 Da    PI: 7.879
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G240400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.8e-1571130155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Glyma.09G240400.1.p  71 SRFRGVSRHRWTGRYEAHLWDkLSWNItqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 130
                          789******************888855655447*************************98 PP

2AP252.41.3e-16173224155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Glyma.09G240400.1.p 173 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 224
                          89****99**********99966...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-1671140IPR016177DNA-binding domain
PfamPF008476.4E-1371130IPR001471AP2/ERF domain
CDDcd000181.19E-1971140No hitNo description
SMARTSM003809.7E-2572144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1572139IPR001471AP2/ERF domain
PROSITE profilePS5103219.54672138IPR001471AP2/ERF domain
PRINTSPR003675.9E-57384IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18173234IPR016177DNA-binding domain
CDDcd000182.58E-24173234No hitNo description
PfamPF008474.9E-12173224IPR001471AP2/ERF domain
SMARTSM003801.4E-26174238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18174233IPR001471AP2/ERF domain
PROSITE profilePS5103218.755174232IPR001471AP2/ERF domain
PRINTSPR003675.9E-5214234IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAMMKENIIE VSLGRRQMSM TEGEFQGTRS VKRRRREVAA AAGSGDDNHQ QQLPQQEVGE  60
NTTVNTTKRS SRFRGVSRHR WTGRYEAHLW DKLSWNITQK KKGKQVYLGA YDEEESAARA  120
YDLAALKYWG TSTFTNFPIS DYEKEIQIMQ TMTKEEYLAT LRRKSSGFSR GVSKYRGVAR  180
HHHNGRWEAR IGRVFGNKYL YLGTYSTQEE AARAYDIAAI EYRGIHAVTN FDLSTYIKWL  240
KPSGGGTLEA NLESHAALEH QKVASPSNYA LTEESKSLAL HNSFFSPYSL DSPVKHERFG  300
NKTYQFSSNK SSSPTALGLL LRSSLFRELV EKNSNVSGEE DDGEATKDQQ TQIATDDDLG  360
GIFFDSFSDI PFVCDPNRYD LELQERDLHS IF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358920.0AC235892.2 Glycine max clone GM_WBc0089E01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587765.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ6X5Y61e-93WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLK7LFS20.0K7LFS2_SOYBN; Uncharacterized protein
STRINGGLYMA09G37540.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-94AP2 family protein